File List

Here is a list of all documented files with brief descriptions:

[detail level 123]

► asigma
asigma_loc.c	Atomic reaction data from local files
asigma_loc.h	Header file for asigma_loc.c
► Bfield
B_2DS.c	2D magnetic field with bicubic spline interpolation
B_2DS.h	Header file for B_2DS.c
B_3DS.c	3D magnetic field with tricubic spline interpolation
B_3DS.h	Header file for B_3DS.c
B_GS.c	Analytic magnetic field
B_GS.h	Header file for B_GS.c
B_STS.c	Stellarator magnetic field with cubic spline interpolation
B_STS.h	Header file for B_STS.c
B_TC.c	Trivial Cartesian magnetic field
B_TC.h	Header file for B_TC.c
► diag
diag_orb.c	Functions to write particle and guiding center information
diag_orb.h	Header file for diag_orb.c
diag_transcoef.c	Transport coefficient diagnostics
diag_transcoef.h	Header file for diag_transcoef.c
dist_5D.c	5D distribution collecting and processing functions
dist_5D.h	Header file for dist_5D.c
dist_6D.c	6D distribution collecting and processing functions
dist_6D.h	Header file for dist_6D.c
dist_com.c	COM-distribution collecting and processing functions
dist_com.h	Header file for dist_com.c
dist_rho5D.c	Distribution collecting and processing functions
dist_rho5D.h	Header file for dist_rho5D.c
dist_rho6D.c	Rho 6D distribution collecting and processing functions
dist_rho6D.h	Header file for dist_rho6D.c
► Efield
E_1DS.c	1D spline electric field evaluation functions
E_1DS.h	Header file for E_1DS.c
E_TC.c	Trivial Cartesian Electric field
E_TC.h	Header file for E_TC.c
► hdf5io
hdf5_asigma.c	Module for reading atomic reaction cross-section data from HDF5 file
hdf5_asigma.h	Header file for hdf5_asigma.c
hdf5_bfield.c	Module for reading magnetic field data from HDF5 file
hdf5_bfield.h	Header file for hdf5_bfield.c
hdf5_boozer.c	Module for reading Boozer data from HDF5 file
hdf5_boozer.h	Header file for hdf5_boozer.c
hdf5_dist.c	Distribution HDF5 IO
hdf5_dist.h
hdf5_efield.c	Module for reading electric field data from HDF5 file
hdf5_efield.h	Header file for hdf5_efielc.c
hdf5_helpers.c	HDF5 wrappers and shortcuts
hdf5_helpers.h	Header file for hdf5_helpers.h
hdf5_histogram.c	HDF5 Histogram IO
hdf5_histogram.h	Header file for hdf5_histogram.c
hdf5_marker.c	Read markers from HDF5 file
hdf5_marker.h	Header file for hdf5_marker.c
hdf5_mhd.c	Module for reading MHD data from HDF5 file
hdf5_mhd.h	Header file for hdf5_mhd.c
hdf5_nbi.c	Module for reading NBI data from HDF5 file
hdf5_nbi.h	Header file for hdf5_nbi.c
hdf5_neutral.c	Module for reading neutral data from HDF5 file
hdf5_neutral.h	Header file for hdf5_neutral.c
hdf5_options.c	Read options from HDF5 file
hdf5_options.h	Header file for hdf5_options.c
hdf5_orbit.c	Module for writing orbits diagnostics data to a HDF5 file
hdf5_orbit.h	Header file for hdf5_orbit.c
hdf5_plasma.c	Module for reading plasma input from HDF5 file
hdf5_plasma.h	Header file for hdf5_plasma.c
hdf5_state.c	Module for writing marker state to HDF5 file
hdf5_state.h	Header file for hdf5_state.c
hdf5_transcoef.c	Module for writing transcport coefficients to a HDF5 file
hdf5_transcoef.h	Header file for hdf5_transcoef.c
hdf5_wall.c	Module for reading wall input from HDF5 file
hdf5_wall.h	Header file for hdf5_wall.c
► linint
linint.h	Linear interpolation library
linint1D.c	Linear interpolation
linint2D.c	Bilinear interpolation
linint3D.c	Trilinear interpolation
► mhd
mhd_nonstat.c	Module for evaluating MHD parameters
mhd_nonstat.h	Header file for mhd_nonstat.c
mhd_stat.c	MHD module for stationary amplitudes (eigenmodes)
mhd_stat.h	Header file for mhd_stat.c
► neutral
N0_1D.c	1D neutral data with linear interpolation
N0_1D.h	Header file for N0_1D.c
N0_3D.c	3D neutral data with trilinear interpolation
N0_3D.h	Header file for N0_3D.c
► plasma
plasma_1D.c	1D linearly interpolated plasma
plasma_1D.h	Header file for plasma_1D.c
plasma_1DS.c	1D spline plasma evaluation functions
plasma_1DS.h	Header file for plasma_1DS.c
plasma_1Dt.c	1D time-dependent plasma with linear interpolation
plasma_1Dt.h	Header file for plasma_1Dt.c
► simulate
► mccc
mccc.c	Interface for using mccc package within ascot5
mccc.h	Header file for mccc package
mccc_coefs.h	Routines to evaluate coefficients needed to evaluate collisions
mccc_fo_euler.c	Euler-Maruyama integrator for collision operator in FO picture
mccc_gc_euler.c	Euler-Maruyama integrator for collision operator in GC picture
mccc_gc_milstein.c	Milstein integrator for collision operator in GC picture
mccc_wiener.c	A module for handling Wiener processes
mccc_wiener.h	Header file for mccc_wiener.c
► step
step_fo_vpa.c	Calculate a full orbit step for a struct of particles with VPA
step_fo_vpa.h	Header file for step_fo_vpa.c
step_gc_cashkarp.c	Guiding center integration with adaptive Cash Karp method
step_gc_cashkarp.h
step_gc_rk4.c	Guiding center integration with RK4
step_gc_rk4.h	Header file for step_gc_rk4.c
step_gceom.h	Guiding center equations of motion
step_gceom_mhd.h	Guiding center equations of motion with MHD activity
step_ml_cashkarp.c	Field line integrator implemented with Cash-Karp method
step_ml_cashkarp.h	Header file for step_ml_cashkarp.c
atomic.c	Atomic reactions model
atomic.h	Header file for atomic.c
simulate_fo_fixed.c	Simulate particles using fixed time-step
simulate_fo_fixed.h	Header file for simulate_fo_fixed.c
simulate_gc_adaptive.c	Simulate guiding centers using adaptive time-step
simulate_gc_adaptive.h	Header file for simulate_gc_adaptive.c
simulate_gc_fixed.c	Simulate guiding centers using fixed time-step
simulate_gc_fixed.h	Header file for simulate_gc_fixed.c
simulate_ml_adaptive.c	Simulate magnetic field-lines using adaptive time-step
simulate_ml_adaptive.h	Header file for simulate_ml_adaptive.c
► spline
interp.h	Spline interpolation library
interp1Dcomp.c	Cubic spline interpolation in compact form
interp1Dexpl.c	Cubic spline interpolation in explicit form
interp2Dcomp.c	Bicubic spline interpolation in compact form
interp2Dexpl.c	Bicubic spline interpolation in explicit form
interp3Dcomp.c	Tricubic spline interpolation in compact form
interp3Dexpl.c	Tricubic spline interpolation in explicit form
spline.h	Header file for splineexpl.c and splinecomp.c
splinecomp.c	Cubic spline interpolation of a 1D data set, compact form
splineexpl.c	Cubic spline interpolation of a 1D data set, explicit form
► wall
wall_2d.c	2D wall collision checks
wall_2d.h	Header file for wall_2d.c
wall_3d.c	3D wall collision checks
wall_3d.h	Header file for wall_3d.c
afsi.c	ASCOT Fusion Source Integrator AFSI
afsi.h
ascot5.h	Main header file for ASCOT5
ascot5_main.c	ASCOT5 stand-alone program
ascot5_main.h	Functions to execute main program externally
asigma.c	Atomic reaction data interface
asigma.h	Header file for asigma.c
B_field.c	Magnetic field interface
B_field.h	Header file for B_field.c
bbnbi5.c	Interface to BBNBI5
bbnbi5.h	Functions to execute bbnbi externally
bbnbi5_main.c	BBNBI5 main program
biosaw.c	Functions for calculating fields from coil geometry
biosaw.h	Header file for biosaw.c
boozer.c	Module for transforming between cylindrical and Boozer coordinates
boozer.h	Header file for boozer.c
boschhale.c	Formulas for fusion cross-sections and thermal reactivities
boschhale.h	Header file for boschdale.c
compiler_flags.h
consts.h	Header file containing physical and mathematical constants
copytogpu.c	Transfer data from and to the GPU
copytogpu.h	Header file for copytogpu.c
diag.c	Interface for simulation diagnostics
diag.h	Header file for diag.c
E_field.c	Electric field interface
E_field.h	Header file for E_field.c
endcond.c	Marker simulation end conditions
endcond.h	Header file for endcond.c
error.c	Error module for ASCOT5
error.h	Error module for ASCOT5
gctransform.c	Module for performing guiding center transformations
gctransform.h	Header file for gctransform.c
gitver.h
hdf5_interface.c	HDF5 operations are accessed through here
hdf5_interface.h	Header file for hdf5_interface.c
libascot.c	Library of Ascot5 functions for external use
libascot_mem.c	Provides memory de/allocation routines for the libascot
libascot_mem.h	Header file for libascot_mem.c
list.c	Simple linked list
list.h	Header file for list.c
math.c	Mathematical utility functions
math.h	Header file for math.c
mhd.c	MHD module interface
mhd.h	Header file for mhd.c
mpi_interface.c	MPI interface
mpi_interface.h	Header file for mpi_interface.c
nbi.c	Functions for NBI simulation and particle generation
nbi.h	Header file for nbi.c
neutral.c	Neutral interface
neutral.h	Header file for neutral.c
octree.c	Simple octree for storing triangles
octree.h	Header file for octree.c
offload.c	Offload functions
offload.h	Header file for offload.h
offload_acc_omp.h
particle.c	Marker structs and conversions between them
particle.h	Header file for particle.c
physlib.h	Methods to evaluate elementary physical quantities
plasma.c	Plasma interface
plasma.h	Header file for plasma.c
print.c	Contains the initialization of VERBOSE_LEVEL
print.h	Macros for printing console output
random.c	Random number generator interface
random.h	Header file for random.c
simulate.c	Simulation is initialized and run from here
simulate.h	Header file for simulate.c
suzuki.c	Suzuki beam-stopping coefficients
suzuki.h	Header file for suzuki.c
wall.c	Wall interface
wall.h	Header file for wall.c